Quantitative trait locus analysis for next-generation sequencing with the functional linear models

It is now well documented that next-generation sequencing (NGS) can generate several millions or even dozens of millions of genetic variation data. As a consequence, these genetic variation data are so densely distributed across the genome that the genetic variation can be modeled as a function of genomic location. But, standard multivariate statistical analysis often […]

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A systematic review of associated structural and chromosomal defects in oral clefts: when is prenatal genetic analysis indicated?

Oral clefts are being diagnosed prenatally more frequently. When informing future parents on outcome and prognosis, the category of cleft as well as the presence of other structural congenital anomalies is crucial. Especially the identification of an underlying chromosomal defect will influence prenatal counselling and management of the pregnancy significantly. To provide a basis for […]

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Clinical significance of copy number variations in the 11p15.5 imprinting control regions: new cases and review of the literature

The chromosomal region 11p15 harbours several imprinted genes, i.e. genes which are expressed in a parent-of-origin manner. Opposite molecular disturbances in 11p15 are associated with two distinct disorders associated with disturbed growth, Silver-Russell and Beckwith-Wiedemann syndrome. Due to the complexity of the 11p15 region and the interactions between the different genes, the interpretation of copy […]

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Identification of the first recurrent PAR1 deletion in Léri-Weill dyschondrosteosis and idiopathic short stature reveals the presence of a novel SHOX enhancer

SHOX, is a gene implicated in human growth.  Defects in SHOX, or its regulatory regions have been observed in ~60% of Léri-Weill dyschondrosteosis (LWD) patients, a skeletal dysplasia, and in 2-5% of idiopathic short stature (ISS) patients.  In this study, we identified the first recurrent deletion within the SHOX regulatory region in these disorders, 19/124 […]

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Genotypic and phenotypic analysis of 396 individuals with mutations in Sonic Hedgehog

Holoprosencephaly is a common human brain malformation; there are many different known causes.  Sonic Hedgehog was the first gene in which mutations were found to cause holoprosencephaly .  Some individuals with Sonic Hedgehog mutations have very severe brain and facial malformations, and do not survive to be born.  However, some people have only subtle facial […]

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Translational Genomic Medicine: Common Metabolic Traits and Ancestral Components of Mexican Americans

Obesity, type 2 diabetes, hyperlipidaemia, hypertension and liver disease are common metabolic disorders in Mexican Americans, the largest minority population in the US. Mexican Americans are an admixed population with European, Amerindian and African ancestries. Ancestral analysis by genotyping a set of ancestry informative markers (AIMs) in this study identified associations between ancestral components and […]

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The immunogenetics of immune dysregulation, polyendocrinopathy, enteropathy, X linked (IPEX) syndrome

The immune system relies on a finely tuned balance between immunity to pathogens and cancers, and tolerance to healthy self, our environment and commensals. This equilibrium is dramatically disrupted in the Immunodysregulation, polyendocrinopathy, enteropathy, X-linked (IPEX) syndrome. This rare disorder is caused by mutations in the FOXP3 gene, a master transcriptional regulator for the development […]

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Prostate cancer risk assessment model: a scoring model based on the Swedish Family-Cancer Database

Prostate cancer is the most common cancer in men and family history of cancer and age are the strongest contributing factors. We followed about 600,000 men from the Swedish Family-Cancer Database (world’s largest of its kind) for 10 years to design the Prostate Cancer Risk Assessment Model (PCRAM) for the first time, which enables clinicians […]

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