{"id":50267,"date":"2021-05-14T17:34:41","date_gmt":"2021-05-14T16:34:41","guid":{"rendered":"https:\/\/blogs.bmj.com\/bmj\/?p=50267"},"modified":"2021-05-17T09:27:28","modified_gmt":"2021-05-17T08:27:28","slug":"jeffrey-aronson-when-i-use-a-word-omics","status":"publish","type":"post","link":"https:\/\/blogs.bmj.com\/bmj\/2021\/05\/14\/jeffrey-aronson-when-i-use-a-word-omics\/","title":{"rendered":"Jeffrey Aronson: When I Use a Word . . . -omics"},"content":{"rendered":"

This week, as <\/span>last week<\/span><\/a>, in my pursuit of new biomedical words that have appeared in the last 50 years, I am investigating words first listed in the <\/span>Oxford English Dictionary<\/span><\/i> (<\/span>OED<\/span><\/i>) over a four-year period, this time from 1996 to 1999 inclusive (Table 1).<\/span><\/p>\n

\"\"<\/a>
Table 1:<\/strong> Biomedical words (n=23) in the OED for which the earliest citations are from 1996\u20139 inclusive (out of a total of 248); I have found no antedatings of these entries.<\/figcaption><\/figure>\n

 <\/p>\n

Sildenafil was discovered in 1995, patented in 1996, and marketed as Viagra. The origin of the brand name is not known, but the Sanskrit word for a tiger was viagra (Box 1). The <\/span>OED<\/span><\/i> discounts this as a possible influence, but I like to think that tigerish symbolism might be relevant. Modern languages in the Indo-Aryan group have similar words for a tiger: bagh in Assamese, Bangla, Hindi, and Odia; vagh in Gujarati; and wagh in Marathi.<\/span><\/p>\n

\"\"<\/a>
Box 1:<\/strong>\u00a0A list of vahanas (vehicles in the shape of animals) of Hindu deities (from J E van Lohuizen-de Leeuw, 1955<\/a>)<\/figcaption><\/figure>\n

 <\/p>\n

I have <\/span>previously<\/span><\/a> dealt with photophoresis when discussing photopheresis, which first appeared in 1984. \u201cPhotopheresis\u201d comes from the Greek verb \u1f00\u03d5\u03b1\u03b9\u03c1\u03b5\u1fd6\u03bd (aphairein), to take away or remove, giving the English noun aphaeresis. In <\/span>extracorporeal photopheresis<\/span><\/a> whole blood is removed from the body and the buffy coat is separated and exposed to 8-methoxypsoralen (methoxsalen), which is inert. The methoxsalen is taken up by cells and activated by exposure to UV A. It binds with high affinity to DNA and other cellular constituents, particularly in lymphoid cells, leading to apoptosis and other effects. The blood is then returned to the body. The many outcomes of this procedure include macrophage activation and changes in cytokine production. \u201cPhotophoresis\u201d has been used to describe the same process, but comes from a different Greek verb, <\/span>\u03d5\u03bf\u03c1\u03b5\u1fd6\u03bd (phorein), to carry. However, photophoresis has another meaning, <\/span>light-induced movement of small particles, which dates from 1991. Not surprisingly the two words have sometimes been confused.<\/span><\/p>\n

Six words in the list end in \u2013ome, \u2013omic, or \u2013omics. To trace the origin of these we need to go back to 1920 and the invention of the word \u201cgenome\u201d by Hans Karl Albert Winkler (1877\u20131945), a German botanist. In his monograph <\/span>Verbreitung und Ursache der Parthenogenesis im Pflanzen- und Tierreiche<\/span><\/i> (Figure 1), published by Gustav Fischer Verlag in Jena, Winkler proposed (Figure 2) \u201cthat the term \u201cgenome\u201d be used for the haploid set of chromosomes\u201d.<\/span><\/p>\n

\"\"<\/a>
Figure 1:<\/strong> The title page of Winkler\u2019s monograph, Verbreitung und Ursache der Parthenogenesis im Pflanzen- und Tierreiche (The distribution and cause of parthenogenesis in the plant and animal kingdoms) (from the Internet Archive<\/a>)<\/figcaption><\/figure>\n

\u00a0<\/span><\/p>\n

\"\"<\/a>
Figure 2:<\/strong> The section of text from Winkler\u2019s monograph (p. 165) in which he proposed the use of the term \u201cgenome\u201d (from the Internet Archive<\/a>); my translation is \u201cI propose that the term “genome” be used for the haploid set of chromosomes, which, with the associated protoplasm, is the material basis of the cellular unit, and to call the nuclei, cells, and organisms in which a similar genome is present more than once in each nucleus, homogenomic, and those that have different genomes in the nucleus, heterogenomic. Individuals who have the same genomes should be called isogenomic, and those whose genomes are fundamentally different, anisogenomic\u201d; the four derivatives Winkler proposed have not found their way into English, or at least not into the OED, although occasional instances can be found of heterogenomic<\/a>, isogenomic<\/a>, and homogenomous<\/a> or homeogenomic<\/a>.<\/figcaption><\/figure>\n

 <\/p>\n

I conjecture that Winkler was being linguistically playful in choosing the word \u201cGenom\u201d, making a pun on the German word “nehmen” to take, as if to say, “Ich habe dieses Wort genommen …”. In other words, \u201cI have taken [genommen] this word [Genom] to mean \u2026\u201d.<\/span><\/p>\n

Within a few years the word had been widely adopted. It appeared in English in 1926, followed by the adjective genomic in 1934. Then in <\/span>1987<\/span><\/a> Victor McKusick and Frank Ruddle, introducing a new journal, <\/span>Genomics<\/span><\/i>, wrote that \u201cFor the newly developing discipline of mapping\/sequencing (including analysis of the information) we have adopted the term Genomics. We are indebted to T. H. Roderick of the Jackson Laboratory, Bar Harbor, Maine, for suggesting the term.\u201d They also suggested that Winkler had coined the term genome as \u201can irregular hybrid of gene and chromosome\u201d. However, in this I believe they were wrong.<\/span><\/p>\n

The <\/span>OED<\/span><\/i> records several uses of the suffix \u2013ome, but does not associate it with \u2013some, a suffix that derives from the Greek noun <\/span>\u03c3<\/span><\/i>\u1ff6<\/span><\/i>\u03bc\u03b1<\/span><\/i>, body, as in \u201cchromosome\u201d. Instead it leaves the origin vague, merely suggesting that it is \u201cperhaps partly modelled\u201d on French and German suffixes \u2013ome and \u2013om. In rare cases \u2013ome is simply a variant of \u2013oma, implying a tumour. However, more often it implies \u201ca part of a plant or animal with a specified structure or nature\u201d. In other cases, the English suffix comes from the French and German \u2013ome and \u2013om, which had been used before Winkler to coin nouns that described all the cellular constituents of a particular kind, in terms such as chondriome, the whole collection of mitochondria in a cell, and plastidome, the whole collection of plastids. So \u201cGenom\u201d to Winkler would have suggested the whole collection of genes in the cell.<\/span><\/p>\n

Then suddenly, beginning with proteome in 1995, the suffixes \u2013ome, \u2013omic, and \u2013omics started to be attached to any word you can think of that might be relevant (Figure 3).<\/span><\/p>\n

\"\"<\/a>
Figure 3:<\/strong> A word cloud showing the relative frequencies of a range of words ending in \u2013omics, as found in a Google search.<\/figcaption><\/figure>\n

 <\/p>\n

So now I have the opportunity to join the throng and to coin a new variant, encompassing all the terminology of linguistics\u2014grammar and syntax, catachresis, onomastics, orthography, punctuation, semantics, semiotics, translation, natural language processing, discourse analysis, and anything else you want to include; it’s all just logomics.<\/span><\/p>\n

Jeffrey Aronson<\/strong>\u00a0is a clinical pharmacologist, working in the Centre for Evidence Based Medicine in Oxford\u2019s Nuffield Department of Primary Care Health Sciences. He is also president emeritus of the British Pharmacological Society.<\/em><\/p>\n

Competing interests:<\/strong>\u00a0None declared.<\/em><\/p>\n

 <\/p>\n

\"\"<\/a><\/p>\n

    \n
  1. https:\/\/blogs.bmj.com\/bmj\/2021\/04\/16\/jeffrey-aronson-when-i-use-a-word-new-and-not-so-new-medical-words<\/span><\/a><\/li>\n
  2. https:\/\/blogs.bmj.com\/bmj\/2021\/04\/26\/jeffrey-aronson-when-i-use-a-word-a-difficult-infection<\/span><\/a><\/li>\n
  3. https:\/\/www.youtube.com\/watch?v=cZkGeR9CWbk<\/a><\/li>\n<\/ol>\n

     <\/p>\n","protected":false},"excerpt":{"rendered":"

    This week, as last week, in my pursuit of new biomedical words that have appeared in the last 50 years, I am investigating words first listed in the Oxford English […]<\/p>\n

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